PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006692
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 427aa    MW: 47692.7 Da    PI: 4.8799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006692genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13255301354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI+ L
  Cla006692 255 MNHVEAERQRREKLNNRFYALRSVVPNV-----SRMDKASLLSDAVSYINAL 301
                689************************6.....4***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-3918171IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-18250316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10255301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-14255306No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17256319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEELVVSPSS SSSSSLLHRL QFLLTTQPLP WAYAIFWQTT TDDNGALFLS WCEGHFQAPI  60
KPTSSSPDHS HSPSLLPDDP MDLDWFYMMS LTQSFPAADG LPGKSFSSGS VVWLTGPDVL  120
ELYDCHRVKE AKSHGIRTLL CVPTSYGVLE LASQQIILED WGLIQQIKSL FDSDLSNFTN  180
ITNSPLPFLD QDFNIEDIGF ISEVPEEEME TPTRKKSKTG EWEMSDSDSP VAKTGAKKTG  240
QKRGRKPNLS KENAMNHVEA ERQRREKLNN RFYALRSVVP NVSRMDKASL LSDAVSYINA  300
LKAKVEEMEL QLRESKKSRE EGGGDGMDNH STTTSEEETK GNNAIASPRF DVEVKIIGED  360
AMVRVQSQNL NFPSAIVMGV FRDMEFQIHH ASITNVNDFM LQDVLIKLPH GFSTDEALKA  420
AILSKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-25151728193Transcription factor MYC3
4rqw_B6e-25151728193Transcription factor MYC3
4rs9_A6e-25151728193Transcription factor MYC3
4yz6_A6e-25151728193Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140617.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0A0KFN70.0A0A0A0KFN7_CUCSA; Uncharacterized protein
STRINGXP_004166899.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-65bHLH family protein