PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006114
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 290aa    MW: 32000.4 Da    PI: 8.4593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006114genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053224246223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp C+  Fs+ s+L  H  + H
  Cla006114 224 QCPQCSSKFSSVSSLIDHVEKvH 246
                7*****************99888 PP
2zf-C2H2157e-05263284323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                Cp+C++ F ++  L+ Hi + H
  Cla006114 263 CPKCSRGFVDPVALVEHIEKdH 284
                ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.1E-12460No hitNo description
PROSITE profilePS510397.9821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.7E-111053IPR000058Zinc finger, AN1-type
SMARTSM001548.7E-51352IPR000058Zinc finger, AN1-type
PfamPF014281.9E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.6E-1091144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.62E-893144No hitNo description
PROSITE profilePS510397.82698147IPR000058Zinc finger, AN1-type
SMARTSM001540.026101142IPR000058Zinc finger, AN1-type
PfamPF014281.1E-6101141IPR000058Zinc finger, AN1-type
SMARTSM003550.053223246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871223246IPR007087Zinc finger, C2H2
PfamPF138940.0011224246No hitNo description
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
SMARTSM0035511261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCNFQDCKQ IDFLPFTCDC CNQVFCLEHR SYNRHSCPKA DKWDVTVVIC  60
PLCAKGVRLI PEQDPNITWE VHVNTECDPS NYDKVTKKKK CPVPRCREFL TFSNTIKCRD  120
CLVDHCLKHR FGPDHKCPGP KKPEPAGFPF VGLLSRSRKE EKGPKKALPT SSSSKWTTAF  180
LNAASSVKAS AEASMTKLSN EFSQTWITSG SSSNGRGGNG QVEQCPQCSS KFSSVSSLID  240
HVEKVHERGG NRPGAKTVVI DACPKCSRGF VDPVALVEHI EKDHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8703020.0AJ870302.1 Cucumis sativus mRNA for somatic embryogenesis zinc finger 2 (SEF2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267641.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-123SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLQ5NDD40.0Q5NDD4_CUCSA; Somatic embryogenesis zinc finger 2
STRINGXP_004162178.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein