PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004118
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 223aa    MW: 25453.4 Da    PI: 9.0811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004118genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-10111200182
                EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                f+k+lt+sd +   grl l k+f+++          +++  e+++++  d++gr+++++++ + ++  yvltk WkeF k n+L  +g+ v+ 
  Cla004118 111 FVKQLTKSDLTDGlGRLALHKEFVNRDlvpmfndneDLV--EGIDVIAFDSEGRQYDMTFKLWTSK-LYVLTKSWKEFYKTNNLTqSGEYVTV 200
                89*******98877**********9889**998854444..8899***************988886.8****************867887764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-13109204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-13110206IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0022111219IPR003340B3 DNA binding domain
CDDcd100172.14E-11111216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKVRYTYNN KIVEKDVYET ALIICDIKSK SMEPFELMEL MRRLKTRFPG STSTTSIGNE  60
QPPVINNNQN VAAVLGGAGD RILRLLPGGA LDRLPPVAVI RNVIGVCSRA FVKQLTKSDL  120
TDGLGRLALH KEFVNRDLVP MFNDNEDLVE GIDVIAFDSE GRQYDMTFKL WTSKLYVLTK  180
SWKEFYKTNN LTQSGEYVTV WMFRHVVNHN LCFAIIQGRF ERP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022145065.12e-47putative B3 domain-containing protein At4g03170
TrEMBLA0A0A0L7L02e-81A0A0A0L7L0_CUCSA; Uncharacterized protein
STRINGXP_008460492.13e-81(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-24B3 family protein