PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001866
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 367aa    MW: 41687.8 Da    PI: 8.5468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001866genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07201223123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cgk F+r  nL+ H+r H
  Cla001866 201 HYCQICGKGFKRDANLRMHMRAH 223
                68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-6199226No hitNo description
SMARTSM003550.0028201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-6201227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632201228IPR007087Zinc finger, C2H2
PfamPF128740.0024202221No hitNo description
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SMARTSM0035593254287IPR015880Zinc finger, C2H2-like
SMARTSM0035517292314IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFSLPSQDPL VSSSNDHHET LDNLLSSYSQ SSNSLLYNLS ILKEKLHQIQ SVVNIAIYNL  60
QNSTESLPPA SSPVATAAVN SLIQELIMAA SSMLFTCQQM DNLVVNASLH NNNVDNNLHD  120
QHHHRQGPVD DDNRRSNTLL DMANDHHHQH QDWYNMTTST NYNNNDNNNS RITTTKTTQD  180
HRNSINIVEL DASDLLAKYT HYCQICGKGF KRDANLRMHM RAHGDEYKAS GALSNPEKSH  240
RRDLNNISKM GTKYSCPQEG CRWNQKHVKF QPLKSLICVK NHFKRTHCPK MYVCKLCSRK  300
KFSVLSDLRT HEKHCGDVKW LCSCGTTFSR KDKLMGHVAL FVGHAPAIGS STKFSGKQEE  360
HQYVHSF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462505.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S3CH280.0A0A1S3CH28_CUCME; protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_008462505.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-96C2H2 family protein