PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001380
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 285aa    MW: 33088.2 Da    PI: 9.1928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001380genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029627223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C++C+k+Fs+   +  H+r+H
  Cla001380  6 ECKICSKRFSNGKAMGGHMRSH 27
               5*******************99 PP
2zf-C2H212.30.00053178200123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k+Fs+   L  H  +H
  Cla001380 178 FKCKKCKKTFSSYQALGGHNASH 200
                89*********998887776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.536532IPR007087Zinc finger, C2H2
SMARTSM003550.18527IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-8628IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.06178200IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-11178202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-7178237No hitNo description
PROSITE profilePS501579.951178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
PfamPF139124.6E-9214237IPR007087Zinc finger, C2H2
SMARTSM003550.055215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118215237IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDKEKECKIC SKRFSNGKAM GGHMRSHSPK FSVLHNSKPT PTTAPKPTPM IDRKGSMVFR  60
DRQSKGKRNR DEHWDDEAEK ALILSSSSPP HSKLVIRKQR LKRHCDDEAE TSILSSLSME  120
EDAALCLLMM KREGRKRMKE EESTTKEDQN GFVSVSKEEF EYKVDEEEEE EDSLRWKFKC  180
KKCKKTFSSY QALGGHNASH RRMENYNGEV QRKVFKCSFC SRVFVSGQAL GGHKKVHFSN  240
LHNNNYDYFN NSQPHRFAKT PLDLNRPSPY GDYDEENKFS EIFNP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.16e-13C2H2-like zinc finger protein