PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033459m
Common NameCICLE_v10033459mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 167aa    MW: 19379 Da    PI: 9.3521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033459mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.42.7e-2781411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      lp Gf+F+P+deel+ +yLkkkv+g  ++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk+++g+r  r++    g+W+   
  Ciclev10033459m   8 LPHGFQFRPSDEELIEHYLKKKVSGIFIPLAEYfIRDCNLYQEKPSEIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssCGTWQGED 101
                      699************************9998888**************632455333478899******************76534799***** PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033459m 102 AGKDIVSGqSKIKIGSKKRFRYEK--QGCEDHGAWIMHEYTL 141
                      *9***99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-315158IPR003441NAC domain
PROSITE profilePS5100534.3068159IPR003441NAC domain
PfamPF023652.0E-209141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKV SGIFIPLAEY FIRDCNLYQE KPSEIWDSHG  60
GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSCGTWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKQGCED HGAWIMHEYT LHMPKNRATN YVLCRLRKNR PTGHDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-16815615165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437282.11e-123NAC domain-containing protein 96
TrEMBLV4TB791e-122V4TB79_9ROSI; Uncharacterized protein
STRINGXP_006437282.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.19e-18NAC domain containing protein 96