PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033346m
Common NameCICLE_v10033346mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 341aa    MW: 39024.6 Da    PI: 4.7795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033346mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.32.4e-2651381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      lp Gf+F+P+deel+ +yLkkkv+g  ++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk ++g+r  r++    g+W+   
  Ciclev10033346m   5 LPHGFQFRPSDEELIEHYLKKKVSGIFIPLAEYfIRDCNLYQEKPSEIWDshggPFLNADEDLYFFTQLKKKFSKGSRIDRKVGssGGTWQGED 98 
                      699************************9998888**************632455333478899******************75544899***** PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033346m  99 AGKDIVSGqSKIKIGSKKRFRYEK--QGCEDHGAWIMHEYTL 138
                      *****99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-313155IPR003441NAC domain
PROSITE profilePS5100535.2425156IPR003441NAC domain
PfamPF023652.5E-196138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
HRPFLPHGFQ FRPSDEELIE HYLKKKVSGI FIPLAEYFIR DCNLYQEKPS EIWDSHGGPF  60
LNADEDLYFF TQLKKKFSKG SRIDRKVGSS GGTWQGEDAG KDIVSGQSKI KIGSKKRFRY  120
EKQGCEDHGA WIMHEYTLHM PKNQATNYVL CRLRKNQPSC HDIMKYGSAK KRKLKDFQDN  180
SNQSEQVADI EMDRLLTHQQ NQQQNYMDYQ EVSCSSSHMM SEQSLAGGMG LASSVYEPSM  240
EMMMSHFDQM ICNQQYDSWN NMLQGGETGE NYHCHLESIA EVPMVVPESL AQHEESDGLP  300
ELIEEDYSFL EDLLHDDAEE PIGDVSGSFG LMLDLDDLLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-16515715171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437281.20.0NAC domain-containing protein 83
TrEMBLV4TL270.0V4TL27_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006437281.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.18e-18NAC domain containing protein 96