PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032547m

Common Name

CICLE_v10032547mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 250aa MW: 28140.8 Da PI: 9.332

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032547m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.2	2.3e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yLk+k+ + +l++ ++i+evd++k++PwdLp v +e yfFs+r+ ky++g+r+nrat sgyWkatg dk++ + Ciclev10032547m 14 LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIAT 103 79**************************.89***********554...4699******************************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg+kktLvfy+g+ p+g++tdW+mheyrl Ciclev10032547m 104 SrGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 856777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-59	10	169	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	14	169	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEKINFMKNG VLRLPPGFRF HPTDEELVVQ YLKRKIFACP LPASIIPEVD VCKSDPWDLP 60 GDVAQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IATSRGNQIV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLVT AANAPQKKNF AQTPAVATDN WVLCRIFLKK RGAKSEDEET 180 CTEIGGTRAN GPKPVFYDFM RKEERADLNL VPTSSSSGSS GVTEVSSNES DDHEESSCNS 240 FPYFRRKQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	12	174	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	12	174	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	12	174	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	12	174	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	12	174	18	173	NAC domain-containing protein 19
3swm_B	6e-53	12	174	18	173	NAC domain-containing protein 19
3swm_C	6e-53	12	174	18	173	NAC domain-containing protein 19
3swm_D	6e-53	12	174	18	173	NAC domain-containing protein 19
3swp_A	6e-53	12	174	18	173	NAC domain-containing protein 19
3swp_B	6e-53	12	174	18	173	NAC domain-containing protein 19
3swp_C	6e-53	12	174	18	173	NAC domain-containing protein 19
3swp_D	6e-53	12	174	18	173	NAC domain-containing protein 19
4dul_A	6e-53	12	174	15	170	NAC domain-containing protein 19
4dul_B	6e-53	12	174	15	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM596723	0.0	HM596723.1 Citrus trifoliata clone Y4-M17 NAC domain transcription factor mRNA, complete cds.
GenBank	KM589038	0.0	KM589038.1 Citrus limon NAC domain-containing protein (NAC) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438824.1	0.0	NAC domain-containing protein 83
Refseq	XP_006483038.1	0.0	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-104	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2H5N9X9	0.0	A0A2H5N9X9_CITUN; Uncharacterized protein
TrEMBL	V4VHI2	0.0	V4VHI2_9ROSI; Uncharacterized protein
STRING	XP_006483038.1	0.0	(Citrus sinensis)
STRING	XP_006438824.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-102	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Ciclev10032547m
Entrez Gene	18044690

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]