PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032015m
Common NameCICLE_v10032018mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 342aa    MW: 37447 Da    PI: 6.7112
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032015mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Ciclev10032015m 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-801330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.583239275IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16239289IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15243302No hitNo description
Gene3DG3DSA:3.30.50.109.8E-15243276IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.01E-14244291No hitNo description
PfamPF003202.3E-15245278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MIGTNFMDEI DCGSFFDHID DLLDFPNEDV EAGLPNADSN SFPSIWPTQS DSLPGSDSVF  60
SNSSTDLSTQ LSVPYEDIVQ LEWLSNFVED SFSGGSLTMS KQESSTITKD DSSHNQFQTS  120
SPVSVLESSS SCSGEKTVLG SPETTAPGRR GRARSKRPRP ATFNPRPPVQ LVSPTSSVTE  180
TQPQHRLIAP KASSDSENFA ESRLVIKIPK QFNPEHKKKK KIKLSVPKVS DETSEVGPTQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH  300
KKVVEMRNKN CQKPIVAGTE TMMTDAPELI PNNNHLALEY V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.9460.0fruit| vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436436.10.0GATA transcription factor 8
RefseqXP_006485699.10.0GATA transcription factor 8
TrEMBLA0A2H5P2I50.0A0A2H5P2I5_CITUN; GATA transcription factor
TrEMBLV4TDM90.0V4TDM9_9ROSI; GATA transcription factor
STRINGXP_006485699.10.0(Citrus sinensis)
STRINGXP_006436435.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-48GATA family protein