PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031305m
Common NameCICLE_v10031305mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 504aa    MW: 56466 Da    PI: 7.4533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031305mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.17.2e-1141315011374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkf 93 
                      lv++L++cAeav+ +d++ a+alL +l+ +a   g+++qR+a++f+++L+ rla  ++ + +  + p ++s   +s++  +l+lf+e++P ++f
  Ciclev10031305m 131 LVQQLIACAEAVACRDKAHASALLLELRVNALVFGTSFQRVASCFVQGLSDRLALVQPlGAVGVVGPAAKSMAITSQRDESLSLFYEICPQIQF 224
                      689***************************************************94431334444444444444899999999*********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      +h++aN  Ilea+ege+ vH++D++++    +G QW +L+q+L +R+++ p +l+iTgvg+     +e+l e+g+ L+++A+ l+++fef + v
  Ciclev10031305m 225 GHFVANASILEAFEGESLVHVVDLGMTlglpHGRQWHSLMQSLVNRSGKVPkRLKITGVGN----CSERLGEIGDELKRYADGLKLSFEFLA-V 313
                      ***********************99873333678*************77666*********....9**************************.7 PP

             GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      +k+le+l+ ++++v+ gE+l+ n++l+lh +++es    +   +vL+ + +lsPkvv +veq+++hn++ Fl rf+eal+yysa+fdsl+a lp
  Ciclev10031305m 314 EKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALN---SVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLP 404
                      ********************************88877777...8************************************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      + + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++vp++  + +qak  lrkv+  +gy++ ee+g+lvlgWk++p+++
  Ciclev10031305m 405 KYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIK--MLMQAKQWLRKVQtCEGYTIIEEKGCLVLGWKSKPIIA 496
                      ****************************************************96..789*********************************** PP

             GRAS 370 vSaWr 374
                      +S+W+
  Ciclev10031305m 497 ASCWK 501
                      ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.793105482IPR005202Transcription factor GRAS
PfamPF035142.5E-111131501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEWGMYWRHG LCLDDKNNEV MGLDLNYSAT ACYRCFNLST LANHSCTWST SDETRNHKRI  60
KKTSMIDESS GSSSRLCNSL NSLPRLQFRD HVWVYTQRYL AIEAMEEAAL AMMAGKDTEV  120
KEEGNGDGMK LVQQLIACAE AVACRDKAHA SALLLELRVN ALVFGTSFQR VASCFVQGLS  180
DRLALVQPLG AVGVVGPAAK SMAITSQRDE SLSLFYEICP QIQFGHFVAN ASILEAFEGE  240
SLVHVVDLGM TLGLPHGRQW HSLMQSLVNR SGKVPKRLKI TGVGNCSERL GEIGDELKRY  300
ADGLKLSFEF LAVEKSLETL QAKDINVEDG EVLVMNSILE LHCVVKESRG ALNSVLQRLH  360
QLSPKVVMLV EQDSSHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTKR AKIEQFYFAE  420
EIKNIVSCEG PARVERHERV DQWRRRMSRA GFQSVPIKML MQAKQWLRKV QTCEGYTIIE  480
EKGCLVLGWK SKPIIAASCW KCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-621155001377Protein SCARECROW
5b3h_D1e-621155001377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042075.10.0DELLA protein GAI1
TrEMBLV4SU450.0V4SU45_9ROSI; Uncharacterized protein
STRINGXP_006438138.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-79GRAS family protein