PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029958m

Common Name

CICLE_v10029958mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 275aa MW: 30990.4 Da PI: 4.4026

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029958m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.9	4.5e-40	8	108	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+C++dC+lapyfpa+qp+ f+n+hklFG+sn+l+++k l+ e+r +am+s++yeA++r r Pv+G++gv+ +lq q+ q++ael Ciclev10029958m 8 ACAACKYQRRRCSSDCPLAPYFPADQPRLFQNAHKLFGRSNILSIIKPLDAERRAEAMRSIIYEANIRDRYPVHGCLGVVCQLQYQIWQVEAEL 101 7********************************************************************************************* PP DUF260 95 allkeel 101 +++++l Ciclev10029958m 102 RAAQAQL 108 *999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.633	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-38	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTLKASQACA ACKYQRRRCS SDCPLAPYFP ADQPRLFQNA HKLFGRSNIL SIIKPLDAER 60 RAEAMRSIIY EANIRDRYPV HGCLGVVCQL QYQIWQVEAE LRAAQAQLDM YRQMYYQQQL 120 STVAADDVPS QLELGMALPY IDALSLLHNN NTNDDDDAVA SYSYNSYSSL YMDARDVWVE 180 DTHAANNNNG SSMAFQSQLV ASQPLEIQQE VVRDCDEMHP FFDTVDDRQS YVDSKEAYES 240 SSEESLKDTT QSIEHVGENE LKTAAACFTL TSVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-26	2	111	5	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-26	2	111	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423139.1	0.0	LOB domain-containing protein 27
Refseq	XP_006479366.1	0.0	LOB domain-containing protein 27-like
Swissprot	Q9STS6	2e-57	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	V4UAT6	0.0	V4UAT6_9ROSI; Uncharacterized protein
STRING	XP_006479366.1	0.0	(Citrus sinensis)
STRING	XP_006423139.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-50	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Ciclev10029958m
Entrez Gene	18035108

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]