 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10029807m |
| Common Name | CICLE_v10029807mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
C2H2 |
| Protein Properties |
Length: 363aa MW: 40057 Da PI: 8.8019 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10029807m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.5 | 3e-07 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Ciclev10029807m 190 HYCQVCGKGFKRDANLRMHMRAH 212
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MSQAVVSSSG PASNPSNVSS LLYSVSFLKQ KVHQLQSVIT ILVSQDHHKP TESTSIALAN 60
MRSLVQEIIL TASSLMVTCQ QMSPPPASTS GTNNITTNEI SQLDPNNNQE ISSGLQGCYN 120
FSEAFDTWYG DHNDLVTTDD DNNRGMHSNN VSNYINNANI TIAENGESFS ETNGDIIEVD 180
AVDLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSA ALTNPLKKNG SSMGKNNEST 240
IKIVRKYSCP QEGCRWNKKH AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD 300
LRTHEKHCGD SKWQCSCGTT FSRKDKLMGH VALFVGHTPA VNVNSTNTYG QKGASTGTNV 360
IR*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
