PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029354m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20802.7 Da PI: 8.5774 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232.5 | 9.9e-72 | 2 | 159 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ +se+vCyv+Cn+CntilavsvP +slf++vtvrCGhC++ll vn+ a q+++ ++ +l++++ + e+++++ ++++ ++ Ciclev10029354m 2 SLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP-------QLQKQHINLEDSITKDCGSSSKCNKF 88 567799*******************************************999999999985.......33333323333333333222222223 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ e ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Ciclev10029354m 89 SSAF---EIAEHETPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 3332...446778999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-73 | 6 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 103 | 153 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-5 | 107 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSLDLASERV CYVHCNYCNT ILAVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ 60 DPQLQKQHIN LEDSITKDCG SSSKCNKFSS AFEIAEHETP RMPPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGNKQAKLD KAAAYAEGTQ 180 KSNGFY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.19655 | 1e-154 | vegetative tissue |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424060.2 | 1e-139 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 4e-81 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A067E4Z3 | 1e-137 | A0A067E4Z3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q3N3 | 1e-137 | A0A2H5Q3N3_CITUN; Uncharacterized protein | ||||
STRING | XP_006487832.1 | 1e-137 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-83 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029354m |
Publications ? help Back to Top | |||
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