PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029283m | ||||||||
Common Name | CICLE_v10029283mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22633.8 Da PI: 7.6581 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 9.2e-43 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+l Ciclev10029283m 45 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQL 138 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Ciclev10029283m 139 AKAQAE 144 *99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.068 | 44 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-43 | 45 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLKMENYEAA ATRNPSKVTS SRAGSSSPPP ISANSSAPPP VIMSPCAACK ILRRRCADKC 60 VLAPYFPPTE PAKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAS ARIRDPVYGC 120 AGAICQLQKQ VSELQAQLAK AQAEVVSMQC QQANLVALLY KEMGKSPQPN SPQSVDHFIT 180 SPESPEANPC SFFEDNNLSG SLWEPALWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-43 | 40 | 152 | 6 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-43 | 40 | 152 | 6 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424648.1 | 1e-153 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 3e-77 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | V4RTD1 | 1e-151 | V4RTD1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424648.1 | 1e-152 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-72 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029283m |
Entrez Gene | 18035417 |