PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028757m
Common NameCICLE_v10028757mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 345aa    MW: 39093.4 Da    PI: 8.713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028757mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05181200120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  Ciclev10028757m 181 FACSICSKTFNRYNNMQMHM 200
                      78*****************9 PP
2zf-C2H2163.3e-05265287123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk+F  k + ++H +++
  Ciclev10028757m 265 FMCRKCGKTFAVKGDWRTHEKNC 287
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5172204No hitNo description
PROSITE profilePS5015710.741181208IPR007087Zinc finger, C2H2
SMARTSM003550.17181203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5181200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-4181200IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355240228260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.44E-6250285No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6261285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535265285IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGLRSYHVED NNLCSFQSPT FIEWLKPSSS SSSSSSSSSS SYSSYVTQQA QLTNPMMTIL  60
KFPPVYQQQK QQQQPENLDE GVRCLPLLSR FKEKKALKEE EEDMQVQETN LGVKQEKIEK  120
VTVALHIGLP NTGDSDAESK DFDTKQEEMI SRKSFLGCSL NKDSRFWIPT PAQILVGPMQ  180
FACSICSKTF NRYNNMQMHM WGHGSEYRKG PDSLKGTQPA AMLRLPCYCC AQGCKNNINH  240
PRAKPLKDFR TLQTHFKRKH GAKPFMCRKC GKTFAVKGDW RTHEKNCGKL WYCTCGSDFK  300
HKRSLKDHIR SFGKGHSPHP SLDGFEDEKE CVTTGSEDEV ARSC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424259.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-126ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLV4UDX00.0V4UDX0_9ROSI; Uncharacterized protein
STRINGXP_006424259.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]