PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023679m
Common NameCICLE_v10023679mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 607aa    MW: 68392.2 Da    PI: 6.2127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023679mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.83.3e-852195911374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal....klfsevsP 89 
                      lv+lLl++Ae v  +++e+a++lL+r + +a+ +++p+qR+++ f+ AL++r+ r +++ ++k       + ++ +++         + ++  P
  Ciclev10023679m 219 LVHLLLAAAEKVGYQQFERASRLLSRCEWTAAARANPVQRIVFNFAAALRERIDReTGNFTAKEELGGIGNGMTLIDHGLGInpvfLICYQRLP 312
                      68*****************************************************222222222222222223333332222222244899*** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      ++++ +lt  qa+ e v +++++Hi+Df+i  G+QW +L+qaLa+R++ p   l++T+v+    g+kee+e tg+ La+fAe+l++pf+f+v+ 
  Ciclev10023679m 313 FHQVVYLTGAQAMIENVGNASKIHILDFEIRCGVQWTSLMQALAEREQRPIqLLKLTAVAF---GNKEEVEVTGKSLASFAESLNLPFQFSVVC 403
                      ***********************************************6655499*******...89***************************9 PP

             GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      ++++ +++ + ++++++E+l+V + l+l ++ + + +le+    +L ++k+l+P ++vv+e ea+hns+sF++rf+e+l +ysa fd+le  l 
  Ciclev10023679m 404 VTNFLEIKEQLFEIRNDESLIVYCPLMLRKMISCPSCLEN----LLGVIKKLNPSLMVVIEVEANHNSPSFVNRFIETLFFYSAYFDALEICLE 493
                      *******************************977777777....************************************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      +++e+r+ +E+  ++  i+nvva+eg+er+ r+ ++  Wr+ ++++ + ++ ls++   qa+l+l++ + +   +++++ +sl+ gWk+ p+ s
  Ciclev10023679m 494 KNTETRTAMEAI-FNSGICNVVAMEGTERTVRNVKMDVWRAFFSRFRMVEIGLSDQSLYQANLVLKQLAcGSSCTLDKNGKSLIVGWKGTPIHS 586
                      **********99.********************************************************9999********************* PP

             GRAS 370 vSaWr 374
                      +S+W+
  Ciclev10023679m 587 LSVWK 591
                      ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.743193570IPR005202Transcription factor GRAS
PfamPF035141.1E-82219591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MANILFSSTS SFDFSEIQGR YSDILEDYHK DEAGIEQNQK QNQMFSMDGL GEISPPLCSQ  60
LGAYQEENSA KKVPTLLEEQ RHLLQQNKSN DLLLNELHAN FVFQTSHSPE MPKLKDVQTS  120
HDQEIKPVKE PFALSSLELL SNYAGGFKKL KGNLSGSYTR NESNAGGSKK LSTEDILRVA  180
GARYVHFFDQ SYDDLSMVMH PFGYGLPGLS EEETRDVELV HLLLAAAEKV GYQQFERASR  240
LLSRCEWTAA ARANPVQRIV FNFAAALRER IDRETGNFTA KEELGGIGNG MTLIDHGLGI  300
NPVFLICYQR LPFHQVVYLT GAQAMIENVG NASKIHILDF EIRCGVQWTS LMQALAEREQ  360
RPIQLLKLTA VAFGNKEEVE VTGKSLASFA ESLNLPFQFS VVCVTNFLEI KEQLFEIRND  420
ESLIVYCPLM LRKMISCPSC LENLLGVIKK LNPSLMVVIE VEANHNSPSF VNRFIETLFF  480
YSAYFDALEI CLEKNTETRT AMEAIFNSGI CNVVAMEGTE RTVRNVKMDV WRAFFSRFRM  540
VEIGLSDQSL YQANLVLKQL ACGSSCTLDK NGKSLIVGWK GTPIHSLSVW KFSRERGRPF  600
LNYKFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2922759027378Protein SCARECROW
5b3h_A2e-2922759026377Protein SCARECROW
5b3h_D2e-2922759026377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444505.10.0DELLA protein RGL1
TrEMBLV4U1600.0V4U160_9ROSI; Uncharacterized protein
STRINGXP_006444505.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16533913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-52RGA-like 2