PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10022859m | ||||||||
Common Name | CICLE_v10022564mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14563.3 Da PI: 9.5352 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.9 | 2.8e-25 | 12 | 88 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ewyfFs+ +kkya+++r r+tk g Wk tg d+++ ++ ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ Ciclev10022859m 12 PDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNcGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 88 4688**************************************988889***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.777 | 1 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-12 | 6 | 87 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-27 | 12 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MFIFYVEQAA TPDDEEWYFF SELQKKYANS DRVDRTTKVG SWKVTGGDRQ IWDNCGKEVI 60 GVKKNLVFHK GHGSKAKKTS WVIHEYHSSK ASIHQKPYYV LCRLRGKLDD KPENYSRGES 120 SGHAGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-15 | 14 | 104 | 73 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491409.1 | 5e-85 | NAC domain-containing protein 96-like | ||||
TrEMBL | V4VX39 | 1e-89 | V4VX39_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491409.1 | 2e-84 | (Citrus sinensis) | ||||
STRING | XP_006444688.1 | 2e-84 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-25 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10022859m |
Entrez Gene | 18047064 |