PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018120m
Common NameCICLE_v10018120mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 165aa    MW: 18435.2 Da    PI: 8.5085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018120mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-121462255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r+  n+ E+ RR ++++ +++L +++P +      Kls  +iL +++ YI +Lq
  Ciclev10018120m 14 RAQRNIQEKHRRTHMKDLISQLASVIPCN-----SKLSMPQILDETTSYIMHLQ 62
                     8889************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.13E-81166No hitNo description
SuperFamilySSF474594.32E-141280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6561261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-121275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-91462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-81867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MVAKKCSAAG SSSRAQRNIQ EKHRRTHMKD LISQLASVIP CNSKLSMPQI LDETTSYIMH  60
LQKNKESLER KKALLKGDDH PEPTVMNIST SGSTLEVNLI CGLNRNFMFH EIISVLEEEG  120
AEVIDVTRFN SGDRVIFSVL SKAINSRIGV ETERVQERLK DLIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015382168.21e-110transcription factor bHLH167-like
RefseqXP_015383298.11e-110transcription factor bHLH167-like
TrEMBLA0A2H5PEV71e-116A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBLV4UBF61e-116V4UBF6_9ROSI; Uncharacterized protein
STRINGXP_006446341.11e-117(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.16e-34bHLH family protein