PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011201m
Common NameCICLE_v10011201mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 694aa    MW: 76051.8 Da    PI: 7.2889
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011201mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-103814181954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Ciclev10011201m 381 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 418
                      554459******************************88 PP
2BELL122.61.6e-39245316172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag++sak Yt+lAlk+iS++FrcLkdai++qi
  Ciclev10011201m 245 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQI 316
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-63168314IPR006563POX domain
PfamPF075262.6E-49173313IPR006563POX domain
PROSITE profilePS5007112.39359422IPR001356Homeobox domain
SMARTSM003894.3E-10362426IPR001356Homeobox domain
CDDcd000861.77E-12362423No hitNo description
SuperFamilySSF466896.42E-17363428IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-29365428IPR009057Homeodomain-like
PfamPF059201.3E-18379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATYFHGNPA EFQAPDGLQT LVLMNPTTYV QQQQQQQQQF SDTNPPPAPA PAHNSLIFLN  60
SSAISPHAPP PPSHTQHFVG IPTTAHQDDS ISPLHGLLPR VHYNLYNPNY PSPPARDTPR  120
AKQGLSLSLS SHQHPAFGSQ GGQTVSGEDI RVSGGSASSG SGVTNGVSGM QSVLLSSKYL  180
KAAQELLDEV VNVNNSGISN KSEFSKKGSG NNNSNINKVI GESSAAAGDD GQSAGKRAAE  240
LTTAERQEIQ MKKAKLINML DEVEQRYRQY HHQMQIVISS FEQAAGIESA KTYTALALKT  300
ISKQFRCLKD AITGQIKAAN KMLGEEDCVG SKIEGSRLKF VDHHLRQQRA LQQLGMIQHN  360
AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DSDKQMLAKQ TGLTRSQVSN WFINARVRLW  420
KPMVEEMYLE EIKDQEQNGS EDKTSKSEHN EDSASKSTAA QEKNLVKETQ NSKSFKSSED  480
NLTNQNVHSM ISMSTIATSP IGGGNARNHS GFSLIGSSEL EGLTQGSPKK PRNSDMNMML  540
SPSNVPSISI DVKPGGNEAT NDLMPMKFDD DDRQSRDGYS FIGNQMNFIQ GFGQYPIGEI  600
GRFDAEQFTP RFSGNGVSLT LGLPHCENLS LSATHQNFLP SQNIQLGRRV EIGEPNEFGT  660
INTQSPHASA AYENMNIQNR KRFAAQLLPD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16368426563Homeobox protein Meis2
3k2a_B3e-16368426563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.205690.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430061.10.0BEL1-like homeodomain protein 1
RefseqXP_024037554.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLV4SW980.0V4SW98_9ROSI; Uncharacterized protein
STRINGXP_006430060.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-171BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]