PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010632m
Common NameCICLE_v10010632mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 370aa    MW: 42383.3 Da    PI: 8.4128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010632mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.81.9e-44641892128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      ppG+rF+P+d elvv+yL++k+ +++l+  + ik v++y+++P++L +++k+ +e e+yf ++rd+ky++g r+nra+++gyWkatg dk+v++
  Ciclev10010632m  64 PPGYRFKPHDGELVVYYLRRKILNQPLPP-NQIKVVELYRFNPNTLTERYKSlGEMECYFLTPRDRKYRNGLRPNRAAADGYWKATGADKPVKH 156
                      9*************************999.77**************9766664777************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g+lvg kk Lvfykg+apkg kt+W+mhey +
  Ciclev10010632m 157 -NGSLVGFKKALVFYKGKAPKGDKTNWIMHEYIV 189
                      .999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5461215IPR003441NAC domain
PROSITE profilePS5100551.15963215IPR003441NAC domain
PfamPF023652.3E-2364188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKDQKQKEQL GDEGKNPNGQ NPCGENPNGE SPKKQNDDAS LVRHPVKSTG HHLIADDSYF  60
DSFPPGYRFK PHDGELVVYY LRRKILNQPL PPNQIKVVEL YRFNPNTLTE RYKSLGEMEC  120
YFLTPRDRKY RNGLRPNRAA ADGYWKATGA DKPVKHNGSL VGFKKALVFY KGKAPKGDKT  180
NWIMHEYIVN NPPQKQKGRN DMRLDDWVLC RIYKKTKQSA KASTRKREDS EEDQQSRSEV  240
ATQSQDSGQT SVDEKAKMLP KTENFKPEGL GIFDVPDYYN QGRFFSAYDN VLLSCQSPYA  300
NFQDGHQGNS QNWLPLIPQS GFQQMLHHNP TWESPMKPEQ FGYPPDDVFS DLPSEDNCFD  360
PLPHNFTNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-516222114174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453418.10.0protein ATAF2
RefseqXP_024953201.10.0protein ATAF2-like
TrEMBLV4U1I40.0V4U1I4_9ROSI; Uncharacterized protein
STRINGXP_006474626.10.0(Citrus sinensis)
STRINGXP_006453418.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17542310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-57NAC-like, activated by AP3/PI