PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10010403m | ||||||||
Common Name | CICLE_v10010403mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | RAV | ||||||||
Protein Properties | Length: 323aa MW: 37055.9 Da PI: 7.5279 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.6e-10 | 43 | 90 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W A+I+ + +r++lg+f ++++Aa a++ a+ +l+ Ciclev10010403m 43 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIRLR 90 799***6.666899****999......44**********99***********998 PP | |||||||
2 | B3 | 88.6 | 5.1e-28 | 166 | 262 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ +++k+ +++l + d+s + W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D++ F Ciclev10010403m 166 FQKELTPSDVGKLNRLVIPKKYAVKYfpqiserveehaENDKADDVQLDFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICF 259 99********************************999988899*************************************************** PP EE- CS B3 83 kld 85 +l Ciclev10010403m 260 YLC 262 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-4 | 43 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.00E-23 | 43 | 101 | No hit | No description |
SuperFamily | SSF54171 | 5.36E-15 | 43 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-18 | 44 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 44 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.963 | 44 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-33 | 163 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.55E-25 | 165 | 261 | No hit | No description |
SuperFamily | SSF101936 | 4.05E-27 | 165 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.999 | 166 | 280 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-26 | 166 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-22 | 166 | 280 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRFRHTS AVSKFKGVVP QQNGHWGAQI 60 YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI 120 NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR 180 LVIPKKYAVK YFPQISERVE EHAENDKADD VQLDFHDKSM KLWKFRYCYW KSSQSFVFTR 240 GWNRFVKENQ LKANDTICFY LCELRDIAKG TKTFCMIDAN KGENGGASAE VSGPYVDMKV 300 DLQLQLGQNI VDDKKENSCL TY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-28 | 165 | 285 | 13 | 130 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453664.2 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C688 | 1e-103 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | V4WJE7 | 0.0 | V4WJE7_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006453664.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15647 | 6 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-105 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10010403m |
Entrez Gene | 18054255 |