PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010221m
Common NameCICLE_v10010221mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 523aa    MW: 59297.4 Da    PI: 7.3418
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010221mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.42.7e-44611872129
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      ppG+rF+P+d el+v+yL++k  +++l+  + ikev++yk++P +L +k+k  +e+ewyfF++r++ky++g+r+nra+ +g+Wkatg dk++++
  Ciclev10010221m  61 PPGYRFKPHDIELLVHYLRRKRMNEPLPP-NRIKEVHLYKFNPDTLSEKYKPfGENEWYFFTPRERKYKNGTRPNRAAGDGFWKATGADKPIKN 153
                      9*************************999.77**************9555444899*************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ +vg kk Lvfy g+ p+g kt+W+mhe+rle
  Ciclev10010221m 154 -DDVVVGFKKALVFYMGKPPRGDKTEWIMHEFRLE 187
                      .999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5559212IPR003441NAC domain
PROSITE profilePS5100553.08560212IPR003441NAC domain
PfamPF023653.6E-2361186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MPDQQQGDKD QDPNGQDRNG KNPNGQGPKG KRPIDHTRDA SPPVRNRMNA AKGPEFDDNF  60
PPGYRFKPHD IELLVHYLRR KRMNEPLPPN RIKEVHLYKF NPDTLSEKYK PFGENEWYFF  120
TPRERKYKNG TRPNRAAGDG FWKATGADKP IKNDDVVVGF KKALVFYMGK PPRGDKTEWI  180
MHEFRLEGPP RTRISGDDMR LDDWVLCKIY KKRDQDRSKL SSSRPSTSRQ DDSISGQDDP  240
QSDTEFQDNG AIDMGVEDSA TLPNETFMPH GPEGPRIIDM SGFYNQGGFL NSYDDTFIYH  300
QSHFVNHNVP YSQGRVPEMP NYYVPYAQGR VTGMPNHNVP YSQGRLPRLA NHNVSDSQGR  360
FPGMTNQNVS VSVSQGRFPT IAPYSYNNSM GQSSPWTQHI MIPTANQNPN EAAESSAAAR  420
GRPFQAYPHQ HMFATSNRNP NQPAEISSSA AARPFQTYPH HHMFATSNQV AESSSAAAAR  480
PFQGLESDMK FEQLNECPPD DFLKDPSDDN CFDPDYHNSR KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-53482153171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453417.10.0NAC transcription factor 25
TrEMBLV4UKJ40.0V4UKJ4_9ROSI; Uncharacterized protein
STRINGXP_006453417.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17542310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-59NAC-like, activated by AP3/PI