PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007172m
Common NameCICLE_v10007172mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 342aa    MW: 39003.4 Da    PI: 6.5875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007172mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.7e-36151402127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                      ppG+rF Pt +elv++yL++k+ +++l+  + i+e++iyk+ P +L +k+++e +  +yfF++rd+ky++g+r++r +  +g+Wka+gk +ev 
  Ciclev10007172m  15 PPGYRFVPTCKELVTYYLRNKILERPLPP-SKIREANIYKHSPTELSEKYDKEGSgVMYFFTPRDRKYPEGERPKRsVDGNGFWKASGKAEEVE 107
                      9*************************999.67**************977777666366******************6677*************9 PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                      +  + l+  k++Lv+y+g+ +k++ktdW+m+e+ 
  Ciclev10007172m 108 N-FDILIAKKRSLVYYQGSYKKPKKTDWLMQEFF 140
                      9.999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-4412169IPR003441NAC domain
PROSITE profilePS5100543.12814170IPR003441NAC domain
PfamPF023651.0E-1815139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
QDNDVDDDEQ CFNFPPGYRF VPTCKELVTY YLRNKILERP LPPSKIREAN IYKHSPTELS  60
EKYDKEGSGV MYFFTPRDRK YPEGERPKRS VDGNGFWKAS GKAEEVENFD ILIAKKRSLV  120
YYQGSYKKPK KTDWLMQEFF MTGSSSSSAR KGRPHNMKLD DWVLCKVYKN KKRDKEEDGG  180
HPVAFPNSST VVGESSELPM MQKLNSNVPA QSPNLLHRSQ AMHAISSQMS TYNNGQNGFQ  240
MPAAMLHSHE VQATSSQMPT YYNGQNFLLL NGGHEDTLWQ QNNSHHHVDS KTNNQPEGID  300
MINNVPNEDT FWCGFLSSDN GDYSEPIDFG GVPNLDYMKS Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3471778174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421412.20.0NAC domain-containing protein 67
TrEMBLV4S2Z40.0V4S2Z4_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421412.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-40NAC-like, activated by AP3/PI