PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10007090m | ||||||||
Common Name | CICLE_v10007090mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 16081.4 Da PI: 10.076 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.3 | 3.4e-07 | 15 | 38 | 1 | 24 |
S---SHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKA 24 k+ien+ r +tfskR gi KKA Ciclev10007090m 15 KKIENEDDRLITFSKRGSGIYKKA 38 68*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.386 | 7 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-9 | 8 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-6 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-6 | 16 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-6 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MAGKKTKRRQ KIEMKKIENE DDRLITFSKR GSGIYKKAIK AYSHARINEL NQQHNDLLRQ 60 LDEEKEQQNM LKQMRRVKET QPRWWETPVD ELNLQELLQM DSAVDDLHQT FLAKINEKTA 120 AAAASSSVAP PMYFHNK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006492961.1 | 2e-62 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4U5S8 | 4e-97 | V4U5S8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421339.1 | 7e-98 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-13 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10007090m |
Entrez Gene | 18032120 |