PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000612m
Common NameCICLE_v10000612mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 617aa    MW: 69377.2 Da    PI: 4.4044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000612mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.2e-53101362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrFhPtdeelv +yLk+k+ +kk+++ ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd++v+
  Ciclev10000612m  10 PPGFRFHPTDEELVLFYLKRKICKKKIKF-DIISETDVYKWDPEELPgQsLLKSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRNVT 102
                      8****************************.99**************96347788999************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kktLvfy+grap+ge+tdWvmhey+l
  Ciclev10000612m 103 C-HSRNVGVKKTLVFYRGRAPTGERTDWVMHEYTL 136
                      *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-585159IPR003441NAC domain
PROSITE profilePS5100554.7959159IPR003441NAC domain
PfamPF023658.8E-2810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKVTSENVWP PGFRFHPTDE ELVLFYLKRK ICKKKIKFDI ISETDVYKWD PEELPGQSLL  60
KSGDRQWFFF SPRDRKYPNG ARSNRATRHG YWKATGKDRN VTCHSRNVGV KKTLVFYRGR  120
APTGERTDWV MHEYTLDEEE LQRCQNISDY YALYKVFKKS GPGPKNGEQY GAPFKEEDWL  180
DDEDLVDTKT VEEIASKELK EVATAHDVKP NGQVPLVLDD FEEFIKQLAD EPLPTETQIN  240
YTYEAPQVVG EEEAQSTLMN ASSREVMFSE PISVCNEQAS FDFTQSASSN LQLYDTSEVT  300
SAPNNCKQVL QIFEEDFLEM DDLIGPQPTV STPEVENLQF NEFDGLSELD LFHDAALFLQ  360
NLEPVDLEEN TNALADNLVN QVDHQFQPQS VVNQVDNQLQ PNLIVNQMNH QLEPNSMGNQ  420
TSHQLQPNLA VSQVDYELQP HSLGAEDISS QQWMHDLCAE DISSQPWMHD QLTNFFTPTE  480
STQGILCPPI SGSIQQSANH PTEANPNQDQ SGQEVGGATS RFASSLWAFV ESIPTTPASA  540
SESPLVNRAF ERMSSFSRMR ITARNPNVAG GDAAALTRRQ ASSNRGFLLL SILGALCAIL  600
WMLMGTMRVL GSCISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-491013616140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434569.10.0NAC domain-containing protein 17
TrEMBLV4V6W80.0V4V6W8_9ROSI; Uncharacterized protein
STRINGXP_006434569.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-142NAC domain containing protein 17