PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g14160
Common NameGSCOC_T00032097001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 261aa    MW: 29307.7 Da    PI: 9.1581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g14160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-0594116123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C k+F ++  L  H++ H
  Cc11_g14160  94 FVCQYCLKCFANSQALGGHQNAH 116
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-590120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.09E-690121No hitNo description
PROSITE profilePS5015711.07494121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEKSISNLSS PSRNNGEKKA YAEKPSVEKK LKLFGFELDP CQNGDHNDLK GLFENDESVN  60
SSSSTVSSGR DQILDQNLPK EKTPPREPAD DKKFVCQYCL KCFANSQALG GHQNAHKKER  120
MRKKRLQLQA RKASLSYYLQ PFQNRHSFNF YASSPLYHDP SFSAPHEFTI SEESQISFSS  180
PYDQDANMVN GSHVSRSWYA LPSAQAPFQQ DSASCKFTLT HVDKSRENRA VIKPSSPLPR  240
SKQNCRSVDL QLGLSLHSTI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095783.10.0zinc finger protein 5
TrEMBLA0A068TY150.0A0A068TY15_COFCA; Uncharacterized protein
STRINGEOY003282e-80(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-14zinc finger protein 5