PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g14770
Common NameGSCOC_T00033623001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 499aa    MW: 57105.7 Da    PI: 7.8436
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g14770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-211691787
     trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                 m+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++   + +t+++fdqlea
  Cc10_g14770  1 MDVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVFKYHKRTKEGRASK--ADGKTYRFFDQLEA 69
                 57789************************************************96..66678*******85 PP
2trihelix106.32.1e-33308393187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Cc10_g14770 308 RWPKAEVQALIRMRTNLDVKYQENGPKGPLWEEISSGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 393
                  8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.02E-16149No hitNo description
PfamPF138373.7E-14570No hitNo description
PROSITE profilePS500905.1571542IPR017877Myb-like domain
SMARTSM007177.1E-4305367IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-4307364IPR009057Homeodomain-like
CDDcd122031.52E-27307372No hitNo description
PfamPF138378.7E-23307394No hitNo description
PROSITE profilePS500907.224307365IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDVAFRDSSL KGPLWEEVSR KMAELGYQRS SKKCKEKFEN VFKYHKRTKE GRASKADGKT  60
YRFFDQLEAL ETNPSMQLPQ PPTRPQPPTP AAAAKAVPMH AASNPPISNA IPTIPSLPPS  120
QSQHLHPPPP TTNAANHPPP PHHHHHHPSN TSFPHHPSLS TSMLSNSSSS STSSDEDIGR  180
RHLRKRKWKD FFERLMKNVI DKQEELQKKF LDTLEKRERD RMIREEAWRV QEMARINREH  240
DLLVQERSMA AAKDAAVIAF LQKITEQQNP NNPNSTPIQL PAQLQLPETT RIPPAPPPTN  300
FMQPSSSRWP KAEVQALIRM RTNLDVKYQE NGPKGPLWEE ISSGMRKLGY NRNAKRCKEK  360
WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYREKAK GETTSFASGY QNVKPENPMV  420
PIMARPEQQW PLQQDQQQQQ QQQQQQQQDS AMEDHGSDNM DENDHDEDDG DEDEDEDEGA  480
GYEIVTNKQA SSVATTVE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7787175e-52DQ778717.1 Coffea canephora microsatellite ES5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093320.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-136TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A068UUT80.0A0A068UUT8_COFCA; Uncharacterized protein
STRINGSolyc12g056510.1.11e-178(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-85Trihelix family protein