PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g14770 | ||||||||
Common Name | GSCOC_T00033623001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 499aa MW: 57105.7 Da PI: 7.8436 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.4 | 2.9e-21 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdqlea Cc10_g14770 1 MDVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVFKYHKRTKEGRASK--ADGKTYRFFDQLEA 69 57789************************************************96..66678*******85 PP | |||||||
2 | trihelix | 106.3 | 2.1e-33 | 308 | 393 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Cc10_g14770 308 RWPKAEVQALIRMRTNLDVKYQENGPKGPLWEEISSGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 393 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 7.02E-16 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 3.7E-14 | 5 | 70 | No hit | No description |
PROSITE profile | PS50090 | 5.157 | 15 | 42 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-4 | 305 | 367 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-4 | 307 | 364 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.52E-27 | 307 | 372 | No hit | No description |
Pfam | PF13837 | 8.7E-23 | 307 | 394 | No hit | No description |
PROSITE profile | PS50090 | 7.224 | 307 | 365 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MDVAFRDSSL KGPLWEEVSR KMAELGYQRS SKKCKEKFEN VFKYHKRTKE GRASKADGKT 60 YRFFDQLEAL ETNPSMQLPQ PPTRPQPPTP AAAAKAVPMH AASNPPISNA IPTIPSLPPS 120 QSQHLHPPPP TTNAANHPPP PHHHHHHPSN TSFPHHPSLS TSMLSNSSSS STSSDEDIGR 180 RHLRKRKWKD FFERLMKNVI DKQEELQKKF LDTLEKRERD RMIREEAWRV QEMARINREH 240 DLLVQERSMA AAKDAAVIAF LQKITEQQNP NNPNSTPIQL PAQLQLPETT RIPPAPPPTN 300 FMQPSSSRWP KAEVQALIRM RTNLDVKYQE NGPKGPLWEE ISSGMRKLGY NRNAKRCKEK 360 WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYREKAK GETTSFASGY QNVKPENPMV 420 PIMARPEQQW PLQQDQQQQQ QQQQQQQQDS AMEDHGSDNM DENDHDEDDG DEDEDEDEGA 480 GYEIVTNKQA SSVATTVE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ778717 | 5e-52 | DQ778717.1 Coffea canephora microsatellite ES5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093320.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-136 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A068UUT8 | 0.0 | A0A068UUT8_COFCA; Uncharacterized protein | ||||
STRING | Solyc12g056510.1.1 | 1e-178 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 8e-85 | Trihelix family protein |