PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g07050

Common Name

GSCOC_T00034575001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 286aa MW: 32155.3 Da PI: 9.3608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g07050	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	120	136	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C++C+k+F+r nL+ Cc10_g07050 120 FSCHICSKTFNRYNNLQ 136 89************998 PP
2	zf-C2H2	10.8	0.0016	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ Cc10_g07050 205 FSCRKCGKCLAVKGDWRTHEKNC 227 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.683	120	148	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MENSNSSMSF TSSLSLFASS SSTADHKIIQ HFNFFPERKS QSSQESQKSS DLEKNPSSFE 60 DEKEDVTISL HIGPPSTCTR IASLSLNDYE KGVENLATGF SPAPYWIPTR AQILVGFTHF 120 SCHICSKTFN RYNNLQQMHM WGHGSQYRKG PESLKGTQPK AMLGIPCYCC EEGCKNNINH 180 PRARPLKDFR TLQTHYKRKH GTKRFSCRKC GKCLAVKGDW RTHEKNCGKR WHCMCGSDFK 240 HKRSLKDHIT SFGSGHGPSP SPPPPPPSID AIDLHESTRT RSLFV*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027150090.1	1e-173	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-101	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A068TXT1	0.0	A0A068TXT1_COFCA; Uncharacterized protein
STRING	XP_009614226.1	1e-123	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-100	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]