PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g06320
Common NameGSCOC_T00034676001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 570aa    MW: 63477.3 Da    PI: 4.4262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g06320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-51191452128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelv +yLkkk+ ++++ l +vi e+d+yk++P++Lp  +k+k+++++w+fFs+rd+ky++g r+nrat+ gyWkatgkd+ + + + 
  Cc10_g06320  19 PPGFRFHPTDEELVLYYLKKKMCRRRHLL-DVIGETDVYKWDPEELPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATRYGYWKATGKDRIIAC-NA 114
                  9**********************999766.9****************6559999****************************************9.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLv+ykgrap+ge+tdWvmhey+l
  Cc10_g06320 115 RDVGVKKTLVYYKGRAPSGERTDWVMHEYTL 145
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5817168IPR003441NAC domain
PROSITE profilePS5100555.15618168IPR003441NAC domain
PfamPF023654.1E-2719145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MKVIEEEISS CFGSGKIFPP GFRFHPTDEE LVLYYLKKKM CRRRHLLDVI GETDVYKWDP  60
EELPGLSKLK TGDRQWFFFS PRDRKYPNGA RSNRATRYGY WKATGKDRII ACNARDVGVK  120
KTLVYYKGRA PSGERTDWVM HEYTLDEEEL KRSQAVKDYY ALYKVYKKSG PGPKNGEQYG  180
APFKEEEWDD EGGETNGLID HNDQENPVKL VNETAPVSEN GIPVVVPSPA VDYEYSLEEL  240
LCEEEAQSNL VDQSSWEVNL HDQSTAVHPA CQEYNVQPSF DLTQSGTSQL QLHEASEVTS  300
APQSYASAPH AVEGDFLEDF LEMDDLLGPQ PTVQAFGKSA VENLQFDEFD GLSELDLYKD  360
APLFLNEFET GEQGQIAQPY MNNMGTEVVD PVSSFYFNDG GTETINCEQT YLSNPEEVSF  420
QPWSHDQRSS VFAATDAHQG TIQPAISGMV YDGNFSDHGS GADQNQSGKQ DGTDSWFSSA  480
LWSFVESIPT TPASASESAN RAFERMSSFS RVRINSKNMN VAAGSISATS SSSVKCKSGF  540
FFFSLLGLLC AILWMLIGTS VKVLGRCIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-461816817165NO APICAL MERISTEM PROTEIN
1ut4_B1e-461816817165NO APICAL MERISTEM PROTEIN
1ut7_A1e-461816817165NO APICAL MERISTEM PROTEIN
1ut7_B1e-461816817165NO APICAL MERISTEM PROTEIN
3ulx_A1e-461814515140Stress-induced transcription factor NAC1
4dul_A1e-461816817165NAC domain-containing protein 19
4dul_B1e-461816817165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091566.10.0NAC domain-containing protein 17-like isoform X1
TrEMBLA0A068TZ020.0A0A068TZ02_COFCA; Uncharacterized protein
STRINGXP_009613291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-123NAC domain containing protein 17