PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g03330
Common NameGSCOC_T00024857001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 356aa    MW: 38729.4 Da    PI: 7.0777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g03330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.12.6e-131611310128
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                   d+e++  +L +  +gk+l+  +vi++++ ++++P++Lp     +   wy   +++kk+      n+    g+W+++g+  ++ + +++  g ++tL 
  Cc10_g03330  16 ADDEVI-MHLDRIRQGKPLPN-NVIDDTNPFQFNPSNLP-----TGGIWYLVGSTEKKE------NK---FGFWREKGTALDIRT-GSAISGRRTTLE 96 
                  699999.89*********999.99***************.....345677766655543......44...6*************9.999********* PP

          NAM 108 fykgrapkgektdWvmheyrl 128
                  f  g+    +kt+W+mhey++
  Cc10_g03330  97 FIAGE----QKTNWIMHEYKI 113
                  **443....589*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6777131IPR003441NAC domain
SuperFamilySSF1019414.05E-1716130IPR003441NAC domain
PfamPF023652.7E-816113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MCPPAPDSPA DMVHGADDEV IMHLDRIRQG KPLPNNVIDD TNPFQFNPSN LPTGGIWYLV  60
GSTEKKENKF GFWREKGTAL DIRTGSAISG RRTTLEFIAG EQKTNWIMHE YKITETGKGK  120
ESRVMCRVLQ SGGRSSNIDL RPNSRQAVSF EQGSRSPSLK HSGVDGNKLL SEADRLLEPR  180
TREPPYMIDG DYLELDDLAD PQSSSTSADN SSCSSFTLDE YFDSHALLQE LEDKNNQGLR  240
ETGTSSKFSV TASVPPSEVV MLPATLGSLV CASGRQPSVG CTAPSSVLKT QNVGERIPDH  300
TAKKPRTEKK EEDSAGSLCP APPLGNAGKS TSKGKEKAAS VNTKRLKKYM CFMPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092148.10.0NAC transcription factor 29-like isoform X1
RefseqXP_027092149.10.0NAC transcription factor 29-like isoform X1
RefseqXP_027092150.10.0NAC transcription factor 29-like isoform X1
TrEMBLA0A068UIV80.0A0A068UIV8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-13NAC domain containing protein 2