PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g12950 | ||||||||
Common Name | GSCOC_T00030407001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21038.8 Da PI: 7.8875 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 224.8 | 2.3e-69 | 16 | 183 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 d+ sseq+Cyv+Cn C+t+lavsvP tslf++vtvrCGhCt+ll vn ++ ll++ ++l++++ ++ + ++++s + + ++t+ s + Cc08_g12950 16 DHLASSEQLCYVHCNICDTVLAVSVPCTSLFQTVTVRCGHCTNLLPVN--MRGLLLPSANQLHNHFGHTFFSPSPNFLDQISSPTPNFLMNQTTASDF 111 67889****************************************965..667789999999999988866666666666666555555555555555 PP YABBY 100 kl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l ++ ++pr+p ++rPPe+rqr+Psaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Cc08_g12950 112 TLpPQTGFSDLPRPPVMNRPPERRQRIPSAYNRFIKEEIQRIKATNPDISHREAFSAAAKNWAHFPHIQFGL 183 6646777899***999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-68 | 20 | 183 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-8 | 126 | 177 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.7E-5 | 132 | 177 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSSSSTSSTT TTLSLDHLAS SEQLCYVHCN ICDTVLAVSV PCTSLFQTVT VRCGHCTNLL 60 PVNMRGLLLP SANQLHNHFG HTFFSPSPNF LDQISSPTPN FLMNQTTASD FTLPPQTGFS 120 DLPRPPVMNR PPERRQRIPS AYNRFIKEEI QRIKATNPDI SHREAFSAAA KNWAHFPHIQ 180 FGLMPDQTV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027182759.1 | 1e-137 | protein YABBY 4-like | ||||
Refseq | XP_027182760.1 | 1e-137 | protein YABBY 4-like | ||||
Refseq | XP_027182761.1 | 1e-137 | protein YABBY 4-like | ||||
Swissprot | A2X7Q3 | 4e-70 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 4e-70 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A068UNT1 | 1e-137 | A0A068UNT1_COFCA; Uncharacterized protein | ||||
STRING | VIT_02s0154g00070.t01 | 1e-106 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-69 | YABBY family protein |
Publications ? help Back to Top | |||
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