PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16800
Common NameGSCOC_T00004131001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 288aa    MW: 31629.8 Da    PI: 8.4213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16800genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05225247223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp C+ +Fs+ ++L++H  + H
  Cc06_g16800 225 QCPQCNLRFSSVMDLVNHVERvH 247
                  7*****************99888 PP
2zf-C2H217.79.9e-06259281223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+C+k F+++ +L+ H  + H
  Cc06_g16800 259 VCPKCSKGFRDPVSLVEHVEReH 281
                  7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183109.16E-12752No hitNo description
PROSITE profilePS510397.8661059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.5E-101153IPR000058Zinc finger, AN1-type
PfamPF014281.1E-121351IPR000058Zinc finger, AN1-type
SMARTSM001540.00611352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.9E-991148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.24E-993146No hitNo description
PROSITE profilePS510397.63698145IPR000058Zinc finger, AN1-type
PfamPF014286.5E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.59101142IPR000058Zinc finger, AN1-type
SMARTSM003550.032224247IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-5225277No hitNo description
PfamPF138944.2E-4225247No hitNo description
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SMARTSM003553.7258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265258286IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCRL IDFLPFTCDS CHQVFCLEHR SYGRHHCPKA NKNDVTVVVC  60
PLCAKGVRLI PDENPNITWE SHVNIECDPS NYDKVTKKRK CPVSGCREIL SFSNKIRCKD  120
CTIEHCLKHR FGPDHRCPGP KKIESTFQFS SFLSSGKQQS KQNPVSSSSS WASSLFRVAS  180
SVRATAESGV ARLSSDFKDI LQGSGSSGGS SSTSHGGSTS GQVEQCPQCN LRFSSVMDLV  240
NHVERVHERN GVMKVTLDVC PKCSKGFRDP VSLVEHVERE HRGTSKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175831.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-115SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A068VDJ20.0A0A068VDJ2_COFCA; Uncharacterized protein
STRINGXP_009765392.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]