PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g12540
Common NameGSCOC_T00041525001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 1080aa    MW: 119802 Da    PI: 6.7115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g12540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F +  +++ +l
  Cc06_g12540 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLVAGDSVLFIR--DEKSQL 220
                  99*****************************9445444.38************************************************4..466667 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++++ r+
  Cc06_g12540 221 LLGIKRA 227
                  8888765 PP
2Auxin_resp121.37.5e-40252334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gt++g+ dldpvrW+ S+Wr+L+
  Cc06_g12540 252 AAHAAANSSPFTIFYNPRASPSEFVIPFAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGIADLDPVRWKSSQWRNLQ 334
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-44114255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-21125226No hitNo description
PROSITE profilePS5086312.534126228IPR003340B3 DNA binding domain
PfamPF023622.7E-21126227IPR003340B3 DNA binding domain
SMARTSM010191.1E-23126228IPR003340B3 DNA binding domain
PfamPF065075.3E-35252334IPR010525Auxin response factor
PfamPF023091.3E-99501038IPR033389AUX/IAA domain
PROSITE profilePS5174526.7849521045IPR000270PB1 domain
SuperFamilySSF542774.71E-89561030No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MKAPTNGYLA NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDSIPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQTWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLVAGDSV LFIRDEKSQL LLGIKRANRQ LPALSSSVIS  240
SDSMHIGILA AAAHAAANSS PFTIFYNPRA SPSEFVIPFA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGIADL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKHPGFP DDESDMESVF KRGMPWLGDD LGLKDATSSV LPGLSLVQWM  420
NMQQNNQLSA AQSGIFPSAL NGNLSTEDHS KLLNFQSPAL AATNLQFGKT NQFNQQTNQL  480
QQTSLVGTQP QQLQQLLHSS VNSQQQQHPQ QHSIQLRQQP QLPQHQQQCP PHLQQPQQLQ  540
QQQNMMPLAS VNNGPSVATS QIPNQNLQQP ALYSQLQQQH LLTGNTQPQQ PASSNKSSLT  600
SLPQDVQYQQ LEHQNNLLQK TQQQQTPMLQ APLQTLQQNL IQRQQVQQTS QQNLSEQNLQ  660
LQLLQKLQQQ QQQQQLLSPL SNHLEPQLPQ QQQPLQQNRP FQQAPVAQQQ PSGNSFSTST  720
LLQSPQHPVN QLQGQNKSRI FVKAYSGPTD GDAPSCSTSP STNNCHVSSS KFPNRNQQGP  780
ITQAGESVID PSPILVHELQ SRSDVRVKHE LSGSKGAEQP KFRSNTEHLD AASSATSYCL  840
DTGGIQQNFP LPGLCLDSDV QSHSRSTLPF TSTVDSLAPD ALLSRGYDSG KDIQNVLSNY  900
GGSSRDIETE LSAAGFGVPN MSFKPGCSND VPITEAGVLN SGLWPNQTQR MRTYTKVQKR  960
GSVGRTIDVT RYKGYDELRH DLARMFGIEG QLEDTQRMEW KLVYVDHEND ILLVGDDPWE  1020
EFVSCVQSIK ILSSAEVQQM SLDGDLGNLP VPNQACSGTD SGNAWRGHYD DNSAASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711535545388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065328.10.0auxin response factor 19-like
TrEMBLA0A068U4G50.0A0A068U4G5_COFCA; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19