PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g02280
Common NameGSCOC_T00023479001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 304aa    MW: 33868 Da    PI: 8.217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g02280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055880123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Cc06_g02280 58 YTCSFCRREFKSAQALGGHMNVH 80
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.55E-65584No hitNo description
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQARYWMWT KRKHDFGSHV FSASLPNPSS YSESWEEQAF AEDAAGGLGG CTWPPRSYTC  60
SFCRREFKSA QALGGHMNVH RRDRARLKQS PTPHMEVLSR NHQILNPCAS LDSPQICTFL  120
YSHDSNDSDH RVVLASPSSP IRVSSPSPPP KIMDCEEKIL GAPQFFSTIV DESYQKSNLS  180
SPQSWSNLVA DKYFHVPDSK NGGKGSKTVK SNGRANGEYV KADLSASLNL LLCRTRSNTS  240
DDAEIFHTYK RRKMDETSVT LLPTSTLADE KCLLQSNLPP KMSPNSKDEL DLELRLGDPP  300
KVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135380229superman protein
2l1o_A8e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069185.10.0zinc finger protein 10-like
TrEMBLA0A068UE830.0A0A068UE83_COFCA; Uncharacterized protein
STRINGEOY074447e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-28zinc-finger protein 10