PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g02130
Common NameGSCOC_T00018408001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 85aa    MW: 9261.79 Da    PI: 10.5935
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g02130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-174778132
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32
                 C  Cg+ +TplWR+gp g++tLCnaCGl+y++
  Cc05_g02130 47 CIACGSDDTPLWRKGPHGPRTLCNACGLRYAR 78
                 778***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-74182IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7564176IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-134281No hitNo description
Gene3DG3DSA:3.30.50.108.9E-164579IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.07E-114676No hitNo description
PfamPF003202.3E-154778IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MVKYLKTCWM TKGNRLKQGG EENASNKVFS ISGSNGVGSS REIQKKCIAC GSDDTPLWRK  60
GPHGPRTLCN ACGLRYARLM KRLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068V7D81e-55A0A068V7D8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1667355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-13GATA transcription factor 12