PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g02130 | ||||||||
Common Name | GSCOC_T00018408001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 85aa MW: 9261.79 Da PI: 10.5935 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.9 | 2.4e-17 | 47 | 78 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C Cg+ +TplWR+gp g++tLCnaCGl+y++ Cc05_g02130 47 CIACGSDDTPLWRKGPHGPRTLCNACGLRYAR 78 778***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.2E-7 | 41 | 82 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.756 | 41 | 76 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-13 | 42 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.9E-16 | 45 | 79 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.07E-11 | 46 | 76 | No hit | No description |
Pfam | PF00320 | 2.3E-15 | 47 | 78 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MVKYLKTCWM TKGNRLKQGG EENASNKVFS ISGSNGVGSS REIQKKCIAC GSDDTPLWRK 60 GPHGPRTLCN ACGLRYARLM KRLA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A068V7D8 | 1e-55 | A0A068V7D8_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16673 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 1e-13 | GATA transcription factor 12 |