PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g15090
Common NameGSCOC_T00004746001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 553aa    MW: 61340.7 Da    PI: 8.3864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g15090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-0593112221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk+F+++  L  H++
  Cc04_g15090  93 VCKECGKCFPSWKALFGHMK 112
                  6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.069931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951936IPR007087Zinc finger, C2H2
SuperFamilySSF576678.91E-10931No hitNo description
PfamPF139122.7E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.91E-1087114No hitNo description
SMARTSM003550.01392114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.74392119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139127.5E-794116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7371393No hitNo description
SMARTSM003550.11371393IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-11371394IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554371398IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7465492No hitNo description
SMARTSM003551.1470492IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265470497IPR007087Zinc finger, C2H2
PfamPF139121.3E-10470494IPR007087Zinc finger, C2H2
PROSITE patternPS000280472492IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEEDQEVKHV CKFCNKSFPC GRSLGGHMRS HLINIPAESN EKHGKKRLPS FKTGNRDDSS  60
KEAQNGYSLR ENRKKTSKFA ANSSEDTSLD SKVCKECGKC FPSWKALFGH MKCHSDKVLS  120
NNSASVEDDS WNSAAANQKL VMDSQSDNEA AAPIRKQRSR TIKRYKATKN INTAPLTIAQ  180
PSPCVTENHE QEQQEEVAMS LIMLSRDASN WGGLKSVGGG ESSDYNSEFL EARSSNQNKQ  240
DCKTESKILK SSSLDSKMKS KIKQPEPSKA SGMSRKEFRV KSSEVSTDAF LGDVFIKKNK  300
VEEGAELQQS KVELPKNQSE SESKKQNLSK RRCIALHDDP ELSADYSITK LACGVSDSEL  360
LYLGSDRKSK FECTTCNKAF HSYQALGGHR ASHKRMKGCL GSKIDSSENS TETEISPNQT  420
ADSKLRIKCY SNDIDTTTDG SKEKVEMTDY GSKEIKTVHT DYGFKKDKSH ECPICFKLFP  480
SGQALGGHKR AHLAAEAKSN QGIVIQKQIP EIRDFLDLNL PAPAEEEGSD QVYFSPWWIA  540
SNHKPEPLVG ML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122472.10.0zinc finger protein ZAT9-like
TrEMBLA0A068VCX20.0A0A068VCX2_COFCA; Uncharacterized protein
STRINGEOY220001e-166(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-34C2H2-like zinc finger protein