PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g00940

Common Name

GSCOC_T00021722001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 396aa MW: 43436.4 Da PI: 10.1707

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g00940	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.6	3.6e-14	68	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++ + +qCk++++ ++k+yk +k+ + + s++p+f++l+ Cc04_g00940 68 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYTKapkTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 155 7***********************************855556551116679*************99997..67778****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.8E-26	66	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEDDEETQSH PSGGTGSPVS PRPNGRITVT VAAAPPSQNT LTLALPIQQH QQQTKPTGNS 60 GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKD VADIVSSRED YTKAPKTDIQ 120 CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP SAKLNSSVLA SGGGAGAGPS 180 YSGSQRVVPM GIPMGVRSAP QLRQQQEKFP QQHLQKQKQQ FRKRPPPPPA VDSDEESEPD 240 GSPDSADDFP PATYERKRPR NQRELMNLGG GVKPAGPGTN RGREGGADKA SVVVRKNWGN 300 SVRELTRAIL KFGEAYEQAE SSKLQQLVDM EKQRMKFAKE LELQRMQFFM KTQLELSQLK 360 TSSSRRVGNN NHHHHSSNNI NATIHTNNHH SDSSN*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEDDEETQSH PSGGTGSPVS PRPNGRITVT VAAAPPSQNT LTLALPIQQH QQQTKPTGNS  60
GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKD VADIVSSRED YTKAPKTDIQ  120
CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP SAKLNSSVLA SGGGAGAGPS  180
YSGSQRVVPM GIPMGVRSAP QLRQQQEKFP QQHLQKQKQQ FRKRPPPPPA VDSDEESEPD  240
GSPDSADDFP PATYERKRPR NQRELMNLGG GVKPAGPGTN RGREGGADKA SVVVRKNWGN  300
SVRELTRAIL KFGEAYEQAE SSKLQQLVDM EKQRMKFAKE LELQRMQFFM KTQLELSQLK  360
TSSSRRVGNN NHHHHSSNNI NATIHTNNHH SDSSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123183.1	0.0	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-109	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A068TR21	0.0	A0A068TR21_COFCA; Uncharacterized protein
STRING	XP_009770839.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10332	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-57	sequence-specific DNA binding transcription factors