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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc01_g10240 |
| Common Name | GSCOC_T00024107001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
C2H2 |
| Protein Properties |
Length: 393aa MW: 43071.4 Da PI: 8.8243 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc01_g10240 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.3 | 3.3e-07 | 220 | 242 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Cc01_g10240 220 HYCQVCGKGFKRDANLRMHMRAH 242
68*******************99 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MIIQGSSNSC FPSGPQGISI YGVSDQDVVS SSSIQAATSA PDTHSSSFLY NLSILKDKVH 60
QVQSLASTFI STDHNQPPES TPIAVASMGT LIQEIIITAS SMMFACQQVS LGAGGPSGNN 120
NRTSNRVTHF GEDRGQGFYA NDALDNWYGD SYNTNNCSTT YNNTRTSSVT VSNHNNEVGV 180
GRRELLPQKG EASGELEKLS PKSYDIVELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR 240
AHGDEYKSTA ALSNPLKNNL GANGKDQEGL PKLPRKYSCP HEGCRWNKKH AKFQPLKSMI 300
CVKNHYKRSH CPKMYVCKRC SRKQFSVLSD LRTHEKHCGD LKWQCSCGTT FSRKDKLMGH 360
VALFVGHTPA ISSLAKMGKA DQNAAQMQLD DR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
