PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g07860 | ||||||||
Common Name | GSCOC_T00015461001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20809.5 Da PI: 8.6964 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.8 | 6.9e-71 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+ q+l++++ ++ k+++ + ++++ s+s+ ++ + Cc01_g07860 2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALPQTLPTQDL-QKLQKQQIN---------NEDATKESGSSSKCNKFT 89 67789*****************************************************993.332222222.........222222233333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Cc01_g07860 90 P-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158 3.3567788899999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-74 | 6 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 99 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.4E-5 | 106 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALPQTLPTQ 60 DLQKLQKQQI NNEDATKESG SSSKCNKFTP FDSAEHDQPR ITPIRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKV DGNKQANKLD HPDAGDQGAQ 180 KSRGFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667757 | 8e-58 | KJ667757.1 Solanum virginianum FAS protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105194.1 | 1e-140 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 5e-78 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A068V4S5 | 1e-138 | A0A068V4S5_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0009g00880.t01 | 1e-104 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-80 | YABBY family protein |
Publications ? help Back to Top | |||
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