PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028614m | ||||||||
Common Name | CARUB_v10028614mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 292aa MW: 32436 Da PI: 5.6775 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 8e-05 | 10 | 31 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksFs+ L H+++H Carubv10028614m 10 TCQVCKKSFSNGKALGGHMKSH 31 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00077 | 255 | 277 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H ++H Carubv10028614m 255 YECQICNRVFESGQALGGHKKVH 277 99**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.14 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-7 | 10 | 31 | No hit | No description |
Pfam | PF13912 | 1.7E-8 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-7 | 208 | 235 | No hit | No description |
SMART | SM00355 | 0.15 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-8 | 213 | 236 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.99E-5 | 253 | 278 | No hit | No description |
Pfam | PF13912 | 8.3E-12 | 254 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 255 | 277 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 255 | 277 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 257 | 277 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MYPLLNQEKT CQVCKKSFSN GKALGGHMKS HTRQFSAELS TGSSLPSLRP RNNLGANFRR 60 PHETVLMRSA LTNEAASGRT PDLTKEGEQE VTAAKGKIFI DLEEEISTES LCGITSEQNA 120 LCLLQMKTMW SGQNPKSTKE GKDTEEYMEI DSEEDVEDSD DEYVAEEQED NEDGDVKFLT 180 SDVGYLTADS DEYADENAYY GTKERRGKKQ SKYMCDICGK VLRSHQALGG HRTSHRNKRL 240 KISGEDGSVV VGKRYECQIC NRVFESGQAL GGHKKVHYAF LSPINFSTSA K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028614m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279551.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | R0G7H6 | 0.0 | R0G7H6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279551.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 5e-87 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028614m |
Entrez Gene | 17876571 |