PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028515m
Common NameCARUB_v10028515mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 354aa    MW: 40950.3 Da    PI: 4.3059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028515mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-1110102198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ffkv       + + l lp +f +    ++  +k +++++  g+ W++ +  rk+ g     v+  GWk+ vk  gLk g+f+ F++dg+++f 
  Carubv10028515m  10 FFKVY--LPDESGDDLELPISFNTFL--PSSLPKNVIVRSICGNIWKMAF--RKCCGDierLVMVHGWKKIVKNVGLKGGEFLEFEFDGSRCF- 96 
                      66666..4445556699999997544..4558899***************..666666666***************************99999. PP

                      .EEEEE- CS
               B3  92 lvvkvfr 98 
                       ++ +f 
  Carubv10028515m  97 -NFCIFG 102
                      .777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-143105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-173106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.7018104IPR003340B3 DNA binding domain
CDDcd100176.01E-138101No hitNo description
SMARTSM010191.7E-910104IPR003340B3 DNA binding domain
PfamPF023621.1E-910101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-7258352IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-5260352IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.17260349IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
NSVDDRLPKF FKVYLPDESG DDLELPISFN TFLPSSLPKN VIVRSICGNI WKMAFRKCCG  60
DIERLVMVHG WKKIVKNVGL KGGEFLEFEF DGSRCFNFCI FGHETCKKLR SSEQIKEIEH  120
VSDGEDDKCS DDDITVLNDG VIDDQYYGDE DRSSENIIVL DEEISDVQDC NEEDTYSEDT  180
TVLDYADNDD TNDVQDYGEE DTSGEDIIVI EDDDDDQDYG DDNYAEEEDE RRRGLQTERK  240
EKSSSGEHDR QYLDNHMNPF FTVNKKNMQR ENLRIPTKVI ANNGLHFSEF INLIDPLEQK  300
FGKLKRRIEG QRIRRFGSII RRNNVKLTDK VICELEKEMD GLVREFKVHV IRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028515m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282242.20.0B3 domain-containing protein At5g60142
SwissprotQ9LST31e-142Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLR0GS240.0R0GS24_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282242.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-143B3 family protein