PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027730m
Common NameCARUB_v10027730mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 238aa    MW: 27808.1 Da    PI: 10.2382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027730mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-1086135155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+r h   Er RR++ ++++  L +llP a     +K++K +i+ekAv+ I +Lq
  Carubv10027730m  86 RCRRHMLKERTRREKQKQCYLALHSLLPFA-----TKNDKNSIVEKAVDEIGKLQ 135
                      6788999***********************.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1279147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-983136No hitNo description
PROSITE profilePS5088813.05285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-786135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-789148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-691140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDQFFVDSSV FQKEDNLWDL ITDDISGYFD KSVSVINRSA FRPYVKGTED TLVSSSSKVN  60
VKKRMVNLLR MNWEKKKSAA APEKERCRRH MLKERTRREK QKQCYLALHS LLPFATKNDK  120
NSIVEKAVDE IGKLQRIKKE LERRIKVVEA KSANDDDMSF TKVRFSLQEP FSGLDSMLEV  180
LRCLKSMKTK LKTVHASFSP HEFSTTMNIQ TQIRGEEVEK KVERRLQENE WKFLFLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027730m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281612.11e-175transcription factor bHLH92
SwissprotQ9FIX51e-119BH092_ARATH; Transcription factor bHLH92
TrEMBLR0GQA21e-173R0GQA2_9BRAS; Uncharacterized protein
STRINGXP_006281612.11e-174(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]