PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026561m | ||||||||
Common Name | CARUB_v10026561mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 394aa MW: 45260.8 Da PI: 6.0326 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 1e-19 | 99 | 189 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k++ +++ s+rlv+p+ + + + ++ ++t +l+ ++g+ W+vk +k+++ + +++GW++Fvk+ngL ++Df++F++dg+++f + Carubv10026561m 99 FLKIF--NSHEHSQRLVIPRGYNKYYPNP--LPQTAVLKRPEGNFWTVKW--KKGQEDtISFQEGWEKFVKDNGLIDRDFLLFTYDGSRSF--W 184 66777..66666778*******9666644..889****************..55555559*************************998888..9 PP EEEE- CS B3 94 vkvfr 98 v+++r Carubv10026561m 185 VRIHR 189 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-21 | 95 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-18 | 97 | 189 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 97 | 191 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 97 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-18 | 99 | 189 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-20 | 99 | 191 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.32 | 301 | 389 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MNVKDGNTEI IQKVKVFLEM EVLLVCLHLL LHGLIYQLFN VQIVQVKRIS YTNISGSYLC 60 RWTLTIHLGP NRLDGVIKRI QTQAKKMVLE NGFPPLPDFL KIFNSHEHSQ RLVIPRGYNK 120 YYPNPLPQTA VLKRPEGNFW TVKWKKGQED TISFQEGWEK FVKDNGLIDR DFLLFTYDGS 180 RSFWVRIHRD GLPLEPSTPI KIQEISDDEI DTAGGGPDRH MEEGDSHEDM IVSLSLGTSD 240 ELSDDDDDDD YDDDEDTAIC EFNKASGSCS KKGRVMKTRR DAVIAESVKV ETLLEDPQNP 300 FFISTSSCSR RVLVISMQVI KDFNLKFEPT IKLIDGFGEL KRKVGKWKDR VVVYKWDEMY 360 NRNKSMPGDI IICEILRDEG DVVHTVKVHF VKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-15 | 99 | 188 | 11 | 99 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026561m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633151.1 | 0.0 | B3 domain-containing protein At5g57720 isoform X2 | ||||
Swissprot | Q9FHH1 | 1e-149 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | R0EWE2 | 0.0 | R0EWE2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280599.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 1e-143 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026561m |
Entrez Gene | 17876524 |
Publications ? help Back to Top | |||
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