PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10025071m

Common Name

CARUB_v10025071mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 306aa MW: 34437.9 Da PI: 5.4303

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10025071m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.5	9.8e-34	94	193	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkife 90 lf r++seeDe+vlL+G+idf+ k+g +p++++d fye+vkksisf+v+k+qlv+K+r+LK+Kf +k k + ++++++fsk+ d+ +f+ Carubv10025071m 94 LFARIFSEEDEVVLLKGIIDFTGKNG-NPTENMDVFYEYVKKSISFNVTKDQLVTKVRNLKRKFDEKILKsldkgITEEDQIVFSKAFDKRCFD 186 799********************9.**********************************99888788889999*********** PP DUF573 91 lskkiWg 97 ls+kiWg Carubv10025071m 187 LSRKIWG 193 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-27	95	193	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAPKQPENVP MVTSSEDDEE ESGSVQNKSD SSSGEESDSS SDEESQPVVS PKKDEKTPVK 60 TSVVSKPSSS KTTTKPTHVV SSLVKTDEKP KQNLFARIFS EEDEVVLLKG IIDFTGKNGN 120 PTENMDVFYE YVKKSISFNV TKDQLVTKVR NLKRKFDEKI LKSLDKGITE EDQIVFSKAF 180 DKRCFDLSRK IWGIDGVLPS KSKKVRQEEL GKRVKDEEDE KPERHVISSS SLSFGQEYVS 240 FFKAENPTCV FDEAEWIAIL DDLKDGPEKR KWEAKLKKTK ALKEGIVMAK LDFATFVTKA 300 IFKQD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10025071m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295934.1	0.0	probable transcription factor At4g01260
Swissprot	O04608	2e-79	STKLR_ARATH; Probable transcription factor At4g01260
TrEMBL	R0G095	0.0	R0G095_9BRAS; Uncharacterized protein
STRING	XP_006295934.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19132	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01260.1	3e-65	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Carubv10025071m
Entrez Gene	17890518