PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023231m | ||||||||
Common Name | CARUB_v10023231mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 440aa MW: 49790 Da PI: 7.5167 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.9 | 4.1e-09 | 255 | 292 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp ++ LAk++gLt++qV++WF N R + Carubv10023231m 255 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 292 5544589*****************************87 PP | |||||||
2 | BELL | 110.7 | 8.3e-36 | 135 | 205 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqel++kkakL+s++e+V++rYkqy++q+qt+issFe++aglgsa+ Yt++Al++iS++Fr +kd+i+ qi Carubv10023231m 135 RQELEIKKAKLISMVEKVEQRYKQYQDQMQTIISSFEQAAGLGSANAYTNMALQTISKKFRVVKDMICLQI 205 79******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.2E-54 | 73 | 203 | IPR006563 | POX domain |
Pfam | PF07526 | 3.5E-34 | 84 | 201 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.904 | 233 | 296 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.29E-11 | 236 | 297 | No hit | No description |
SMART | SM00389 | 1.8E-8 | 236 | 300 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-17 | 237 | 303 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-27 | 239 | 302 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-17 | 253 | 292 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MASFFNGESD MRDQPSSDLF MMNLNPFTEP TTTTNGHNHH FYNLCFVSQQ HGPRDEVDHL 60 EQGNSSISTF SNQELVFKAL APIYLRAAQE LLNEIVNLGN GSHGAKQKQP MSKESGIYGN 120 GGILGGHKPG VAGYRQELEI KKAKLISMVE KVEQRYKQYQ DQMQTIISSF EQAAGLGSAN 180 AYTNMALQTI SKKFRVVKDM ICLQIKHINK LLGKKECDDE KLKQLEKMAD RHTNAWRPQR 240 GLPEKAVSVL RSWLFEHFLH PYPRDLDKVM LAKQTGLTKS QVSNWFINAR VRVWKPMVEE 300 LYMEEMDIEE SKKGNNPNEN STKASSSKQP YNNTTSDESS NSILPVFYQR FNENETPMQN 360 SSSSYSIGRF KKHHMNQDNF IHFHGGFENY HTMVGNGVSL SLGLPHSCDQ TFNNIQFGST 420 SQGTEISGIY PSSAYQIMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-16 | 242 | 300 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 9e-16 | 242 | 300 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023231m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294234.2 | 0.0 | BEL1-like homeodomain protein 5 | ||||
Swissprot | Q8S897 | 0.0 | BLH5_ARATH; BEL1-like homeodomain protein 5 | ||||
TrEMBL | R0FW02 | 0.0 | R0FW02_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294234.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14749 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27220.1 | 0.0 | BEL1-like homeodomain 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023231m |
Entrez Gene | 17889102 |