PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10021420m | ||||||||
Common Name | CARUB_v10021420mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 26198.3 Da PI: 6.0793 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.4 | 2.9e-23 | 93 | 153 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++k s + rsYYrC++a +C+++k+v+ ++ p v+ + Y g+H+++ Carubv10021420m 93 DDGFAWRKYGQKTIKTSVHQRSYYRCAYAkdrNCNATKRVQMIKDSPPVFRTSYMGQHTCK 153 8***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-23 | 86 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.452 | 87 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-23 | 90 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-32 | 92 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-23 | 93 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MFSNIDHKAL AALLHGQGCA NNLKTLLDNR EISSVLIEPL INTILDSFSL ALSFVDSPTP 60 PQLLESSSCQ NMAALVHQRS SKKDHESPNP RPDDGFAWRK YGQKTIKTSV HQRSYYRCAY 120 AKDRNCNATK RVQMIKDSPP VFRTSYMGQH TCKAFEVYDE TYGSEMIQFD QVKSELVMPT 180 STDHQAITID DKARDHTMNQ GCDINDFLVD YDQFWQNEFP SFSYGDTVFS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 93 | 153 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10021420m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023644077.1 | 1e-171 | probable WRKY transcription factor 63 | ||||
Swissprot | Q9C557 | 1e-106 | WRK64_ARATH; Probable WRKY transcription factor 64 | ||||
TrEMBL | R0GDS1 | 1e-174 | R0GDS1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301029.1 | 1e-175 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66560.1 | 1e-108 | WRKY DNA-binding protein 64 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10021420m |
Entrez Gene | 17894375 |