PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021345m
Common NameCARUB_v10021345mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 455aa    MW: 51010.2 Da    PI: 6.0297
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021345mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.3e-10168212546
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLk 46 
                      +  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e k+ +
  Carubv10021345m 168 RTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEELKRVR 212
                      5679***********************974446777777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-6164235IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.347166210IPR004827Basic-leucine zipper domain
PfamPF001704.6E-7167210IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-6168210No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-7170211No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
PfamPF141447.9E-28253326IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQSSFKTVPF NPDFYSQSSY FFRGDSCLED FHQPVNGFHH DEPIDLSPNV TIASANLHYT  60
TFDTVMECGG LRERLEREDE CLDTEQLVYQ KETRLVGGGG GGGGGGEVNI SLENWCDSVS  120
AMADNSQHTD TSTDIDTDDK TQLNGVRQGM VLATNCSDQS KVKSSEQRTL RRLAQNREAA  180
RKSRLRKKAY VQQLENSRIR LAQLEEELKR VRQQGNLAES GVTADHTHLA AGNGAFSFEL  240
EYTRWKEEHQ RLINDLRSGV NSQLGDNELR VLVDAVMSHY DEIFRLKGIG TKVDVFHMLS  300
GMWKTPAERF FMWLGGFRSS ELLKILGNHV DPLTDQQLIG ICNLQQSSQQ AEDALSQGME  360
ALQQSLLETL SSASMGPNSS ANVADYMGHM AMAMGKLGTL ENFLRQADLL RQQTLQQLHR  420
ILTTRQAARA FLVIHDYISR LRALSSLWLA RPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021345m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300957.10.0transcription factor PERIANTHIA isoform X1
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLR0I7100.0R0I710_9BRAS; Uncharacterized protein
STRINGXP_006300957.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]