PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018856m | ||||||||
Common Name | CARUB_v10018856mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21870.5 Da PI: 7.2926 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +++d+ k++G+g+Wk Iar+ k R++ q+ s+ qky Carubv10018856m 97 PWSAEEHSRFLDGLKKYGKGDWKNIARECVKSRSPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.2 | 3 | 57 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.814 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-16 | 93 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-11 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-11 | 94 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-15 | 95 | 145 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 5.21E-11 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 6.5E-12 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASIPVWSRH DDKRFELALK HFSQGSQDSQ ELLKKIALHI EKPYEEVKEY YLALVYDVGL 60 IESGRIAIPK YDEDYYVPLK EATESKSQVI EKAKGTPWSA EEHSRFLDGL KKYGKGDWKN 120 IARECVKSRS PTQVASHAQK YFLRQSSDSK KGKRSSIHDM TLGHTDNVTD PTGSNMSSMD 180 QQPHSVDQPP LD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018856m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292614.2 | 1e-142 | transcription factor SRM1 | ||||
TrEMBL | R0FS09 | 1e-140 | R0FS09_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006292614.1 | 1e-141 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14731 | 7 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 1e-78 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018856m |
Entrez Gene | 17885574 |