PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016398m | ||||||||
Common Name | CARUB_v10016398mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20889.1 Da PI: 9.3702 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.7 | 2.7e-17 | 2 | 51 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++e++ r +tfskR+ gi+KK +E +C++eva+++fs+ gk y+++ Carubv10016398m 2 KKVEDYADRMITFSKRKGGIFKKMNEFVAMCNVEVAILVFSQAGKAYTFA 51 5789*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-13 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-19 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.787 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-19 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-8 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-8 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MKKVEDYADR MITFSKRKGG IFKKMNEFVA MCNVEVAILV FSQAGKAYTF AYPSMDEVAA 60 RLKNPWGQEL VVKDDTVPLV EAYKKRRIQD HMIKMEALDE ELAQDLEKLK LLKKSRKEKK 120 VGKMWWNIPQ EGLSMKEAQR RHRALVELHD NLREMFISLS GNGGASSSSA GSWGCDHSSG 180 DESG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016398m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300167.2 | 1e-135 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | R0I4Y6 | 1e-134 | R0I4Y6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300167.1 | 1e-134 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-58 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016398m |
Entrez Gene | 17890884 |