PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013628m
Common NameCARUB_v10013628mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 469aa    MW: 51765.6 Da    PI: 4.8288
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013628mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35241152102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ +++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ l+
  Carubv10013628m  24 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILK 108
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  Carubv10013628m 109 SIVRRKP 115
                      ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-3818108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5720113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGSSCESVPT ANSSTAVVGS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK  60
QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKQILKSI VRRKPAQVQP  120
QQQPQVQHSS VGACVEVGKF GLEEEVDRLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK  180
VHVMEQRQQQ MMSFLAKAVQ SPGFINQFSQ QNNDANQHIS ESNKKRRLPV EDQKNPASHG  240
VNGLSRQIVR YQSSMNDAAN TMLQQIQQMS NSPSHESFST NHGSFLLGDV PSSNLSDNGS  300
SSNGSSGVTL ADVSSNPAGL YPAMKYHDPC ETNQVLETTL PYSPGDLVAP KQGAATSGSS  360
NSDFVGCEID NGECLDPIMA VLDCPIELEA GAINELLPEV QDSFWGQFLG ETPVIGDTDE  420
LISGSVENEL IMEHLELQSS LSNGWSKNQQ MNHLTEQMGL LTSDALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-262011325129Heat shock factor protein 1
5d5v_B7e-262011325129Heat shock factor protein 1
5d5v_D7e-262011325129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013628m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297607.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLR0HYA00.0R0HYA0_9BRAS; Uncharacterized protein
STRINGXP_006297607.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]