PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013628m | ||||||||
Common Name | CARUB_v10013628mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HSF | ||||||||
Protein Properties | Length: 469aa MW: 51765.6 Da PI: 4.8288 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+ +++++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ l+ Carubv10013628m 24 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILK 108 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i r+k Carubv10013628m 109 SIVRRKP 115 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.9E-38 | 18 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.17E-33 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-57 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGSSCESVPT ANSSTAVVGS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK 60 QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKQILKSI VRRKPAQVQP 120 QQQPQVQHSS VGACVEVGKF GLEEEVDRLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK 180 VHVMEQRQQQ MMSFLAKAVQ SPGFINQFSQ QNNDANQHIS ESNKKRRLPV EDQKNPASHG 240 VNGLSRQIVR YQSSMNDAAN TMLQQIQQMS NSPSHESFST NHGSFLLGDV PSSNLSDNGS 300 SSNGSSGVTL ADVSSNPAGL YPAMKYHDPC ETNQVLETTL PYSPGDLVAP KQGAATSGSS 360 NSDFVGCEID NGECLDPIMA VLDCPIELEA GAINELLPEV QDSFWGQFLG ETPVIGDTDE 420 LISGSVENEL IMEHLELQSS LSNGWSKNQQ MNHLTEQMGL LTSDALRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 20 | 113 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 20 | 113 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 20 | 113 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00328 | DAP | Transfer from AT3G02990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013628m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026365 | 0.0 | BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297607.1 | 0.0 | heat stress transcription factor A-1e | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | R0HYA0 | 0.0 | R0HYA0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297607.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013628m |
Entrez Gene | 17892592 |
Publications ? help Back to Top | |||
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